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MacPorts Portfiles

The MacPorts Project currently distributes 20539 ports, organized across 83 different categories and available below for viewing. This form allows you to search the MacPorts software index, last updated on 2014-10-31 at 21:00:31 America/Los_Angeles.


Or view the complete ports list (20539 ports).


Query Results

21 Portfiles Selected

bowtie 0.12.9
an ultrafast, memory-efficient short read aligner
Licenses: Artistic-1 LGPL-3+
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: md5sha1sum unzip
Variants: universal

cell-id 1.4.6
Microscopy based cytometry segmentation software
Licenses: LGPL-2.1+
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: unzip glib2 tiff

cufflinks 0.9.3
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
Licenses: Boost
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: boost samtools zlib

p5-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.12-eval

p5-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.12-ipe

p5.10-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.10

p5.10-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.10-eval p5.10-libxml-enno p5.10-xml-libxml perl5.10

p5.12-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.12

p5.12-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.12-eval p5.12-libxml-enno p5.12-xml-libxml perl5.12

p5.14-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.14

p5.14-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.14-eval p5.14-libxml-enno p5.14-xml-libxml perl5.14

p5.16-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.16

p5.16-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.16-eval p5.16-libxml-enno p5.16-xml-libxml perl5.16

p5.8-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.8

p5.8-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Licenses: unknown
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.8-eval p5.8-libxml-enno p5.8-xml-libxml perl5.8

py-ete2 2.2.1072
Python Environment for Tree Exploration (ETE)
Licenses: GPL-3
Maintained by:
Categories: python biology science
Platforms: darwin
Dependencies: py27-ete2

py26-ete2 2.2.1072
Python Environment for Tree Exploration (ETE)
Licenses: GPL-3
Maintained by:
Categories: python biology science
Platforms: darwin
Dependencies: py26-pyqt4 py26-mysql py26-scipy py26-setuptools python26

py27-ete2 2.2.1072
Python Environment for Tree Exploration (ETE)
Licenses: GPL-3
Maintained by:
Categories: python biology science
Platforms: darwin
Dependencies: py27-pyqt4 py27-mysql py27-scipy py27-setuptools python27

raxml 7.7.6
Estimation of phylogenetic trees
Licenses: GPL-2+
Maintained by:
Categories: science biology
Platforms: darwin
Variants: clang30 clang31 clang32 clang33 clang34 clang35 dragonegg30 dragonegg31 dragonegg32 dragonegg33 dragonegg34 gcc44 gcc45 gcc46 gcc47 gcc48 gcc49 hybrid llvm mpich mpich_devel openmpi openmpi_devel pthreads

tophat 1.2.0
a fast splice junction mapper for RNA-Seq reads
Licenses: LGPL-3+
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: bowtie samtools zlib

vcellid 0.1
GTK GUI for cell-id
Licenses: unknown
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: unzip cell-id gtkimageview pkgconfig