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MacPorts Portfiles

The MacPorts Project currently distributes 18465 ports, organized across 83 different categories and available below for viewing. This form allows you to search the MacPorts software index, last updated on 2014-04-23 at 23:00:26 America/Los_Angeles.


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Query Results

19 Portfiles Selected

bowtie 0.12.9
an ultrafast, memory-efficient short read aligner
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: md5sha1sum
Variants: universal

cell-id 1.4.6
Microscopy based cytometry segmentation software
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: glib2 tiff

cufflinks 0.9.3
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: boost samtools zlib

p5-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.12-eval

p5-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.12-ipe

p5.10-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.10

p5.10-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.10-eval p5.10-libxml-enno p5.10-xml-libxml perl5.10

p5.12-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.12

p5.12-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.12-eval p5.12-libxml-enno p5.12-xml-libxml perl5.12

p5.14-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.14

p5.14-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.14-eval p5.14-libxml-enno p5.14-xml-libxml perl5.14

p5.16-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.16

p5.16-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.16-eval p5.16-libxml-enno p5.16-xml-libxml perl5.16

p5.8-eval 2.2.8
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.8

p5.8-ipe 0.1.48
Perl module for parameter estimation with hidden Markov models.
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.8-eval p5.8-libxml-enno p5.8-xml-libxml perl5.8

py26-ete2 2.0rev90
Python Environment for Tree Exploration (ETE)
Maintained by:
Categories: python biology science
Platforms: darwin
Dependencies: py26-pyqt4 py26-mysql py26-scipy py26-setuptools python26

raxml 7.7.6
Estimation of phylogenetic trees
Maintained by:
Categories: science biology
Platforms: darwin
Variants: clang30 clang31 clang32 clang33 clang34 clang35 dragonegg30 dragonegg31 dragonegg32 dragonegg33 dragonegg34 gcc44 gcc45 gcc46 gcc47 gcc48 gcc49 hybrid llvm mpich mpich_devel openmpi openmpi_devel pthreads

tophat 1.2.0
a fast splice junction mapper for RNA-Seq reads
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: bowtie samtools zlib

vcellid 0.1
GTK GUI for cell-id
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: cell-id gtkimageview pkgconfig