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MacPorts Portfiles

The MacPorts Project currently distributes 23477 ports, organized across 89 different categories and available below for viewing. This form allows you to search the MacPorts software index, last updated on 2019-12-05 at 16:34:05 UTC.


Or view the complete ports list (23477 ports).


Query Results

15 Portfiles Selected

bowtie 1.2.3 (source)
an ultrafast, memory-efficient short read aligner
Licenses: Artistic-1 LGPL-3+
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: python27 seqan-1 tbb zlib
Variants: universal

bowtie2 2.3.5.1 (source)
Bowtie 2: Fast and sensitive read alignment
Licenses: GPL-3+
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: python27 tbb zlib

cell-id 1.4.6 (source)
Microscopy based cytometry segmentation software
Licenses: LGPL-2.1+
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: unzip glib2 tiff

cufflinks 2.2.1 (source)
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
Licenses: Boost-1
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: boost eigen3 htslib samtools zlib
Variants: universal

p5.26-eval 2.2.8 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: GPL
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.26

p5.26-ipe 0.3.1 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: BSD
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.26-eval p5.26-libxml-enno p5.26-xml-libxml perl5.26
Variants: universal

p5.28-eval 2.2.8 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: GPL
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.28

p5.28-ipe 0.3.1 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: BSD
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.28-eval p5.28-libxml-enno p5.28-xml-libxml perl5.28
Variants: universal

p5.30-eval 2.2.8 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: GPL
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: perl5.30

p5.30-ipe 0.3.1 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: BSD
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.30-eval p5.30-libxml-enno p5.30-xml-libxml perl5.30
Variants: universal

p5-eval 2.2.8 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: GPL
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.28-eval

p5-ipe 0.3.1 (source)
Perl module for parameter estimation with hidden Markov models.
Licenses: BSD
Maintained by:
Categories: perl biology
Platforms: darwin
Dependencies: p5.28-ipe

raxml 7.7.6 (source)
Estimation of phylogenetic trees
Licenses: GPL-2+
Maintained by:
Categories: science biology
Platforms: darwin
Variants: avx clang33 clang34 clang35 clang36 clang37 clang38 clang39 clang40 clang50 dragonegg33 dragonegg34 gcc44 gcc45 gcc46 gcc47 gcc48 gcc49 gcc5 gcc6 gcc7 hybrid llvm mpich mpich_devel openmpi openmpi_devel pthreads sse3

tophat 2.1.2 (source)
a fast splice junction mapper for RNA-Seq reads
Licenses: Boost-1
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: autoconf automake boost bowtie2 libtool py27-intervaltree2 py27-sortedcontainers python27 samtools-0.1 seqan-1 zlib
Variants: universal

vcellid 0.1 (source)
GTK GUI for cell-id
Licenses: unknown
Maintained by:
Categories: science biology
Platforms: darwin
Dependencies: unzip cell-id gtkimageview pkgconfig
Variants: universal